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Home/Compounds/Pharmaceutical Intermediate/5'-O-(4,4-Dimethoxytrityl)-2'-deoxy-2'-fluorouridine-3'-(2-cyanoethyl-N,N-diisopropyl)phosphoramidite
C39H46FN4O8P
748.8 g/mol
Pharmaceutical Intermediate

3-[[(2R,3R,4R,5R)-2-[[bis(4-methoxyphenyl)-phenylmethoxy]methyl]-5-(2,4-dioxopyrimidin-1-yl)-4-fluorooxolan-3-yl]oxy-[di(propan-2-yl)amino]phosphanyl]oxypropanenitrile

CAS146954-75-8EC890-263-5
Category
Pharmaceutical Intermediate
Compound Class
Amine
Primary Use
Pharmaceutical Intermediate

This compound is a protected nucleotide derivative used as an intermediate in the synthesis of modified oligonucleotides. It features a 2'-fluoro-2'-deoxyuridine core with a 5'-O-dimethoxytrityl protecting group and a 3'-O-(diisopropylamino-2-cyanoethoxyphosphanyl) moiety, facilitating its incorporation into nucleic acid research.

modified nucleotide synthesis intermediateresearch reagent for oligonucleotide manufacturing

Content scope: Information here supports chemical identification and industrial supply, research, and manufacturing contexts. It is not a therapeutic claim, medical advice, or drug-use instructions.

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Related Compounds

StrongStructure SimilarSimilarity 0.87

5'-O-(4,4-Dimethoxytrityl)-2'-O-methyluridine-3'-(2-cyanoethyl-N,N-diisopropyl)phosphoramidite

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SimilarStructure SimilarSimilarity 0.81

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SimilarStructure SimilarSimilarity 0.81

5'-O-(4,4-Dimethoxytrityl)-2'-O-[(tert-butyl)dimethylsilyl]uridine-3'-(2-cyanoethyl-N,N-diisopropyl)phosphoramidite

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SimilarStructure SimilarSimilarity 0.76

Methyl 16-[(2R,3R,4R,5R)-5-[[bis(4-methoxyphenyl)-phenyl-methoxy]methyl]-4-[2-cyanoethoxy-(diisopropylamino)phosphanyl]oxy-2-(2,4-dioxopyrimidin-1-yl)tetrahydrofuran-3-yl]oxyhexadecanoate

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Identifiers
IUPAC Name

3-[[(2R,3R,4R,5R)-2-[[bis(4-methoxyphenyl)-phenylmethoxy]methyl]-5-(2,4-dioxopyrimidin-1-yl)-4-fluorooxolan-3-yl]oxy-[di(propan-2-yl)amino]phosphanyl]oxypropanenitrile

InChIKey

HQHQPAYRJJMYQX-DJTPZYMWSA-N

SMILES

CC(C)N(C(C)C)P(OCCC#N)O[C@@H]1[C@H](O[C@H]([C@@H]1F)N2C=CC(=O)NC2=O)COC(C3=CC=CC=C3)(C4=CC=C(C=C4)OC)C5=CC=C(C=C5)OC

Synonyms (25)
  • 2'-F-U Phosphoramidite
  • 2'-F-dU Phosphoramidite
  • 2'-F-dU-CE-Phosphoramidite